Developing a Philosophical Foundation for the Study of the Microbial Side of Symbiosis
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Abstract
Symbiotic associations have been studied extensively in recent years, focusing mainly on the potential benefits to the host. However, understanding the role played by microorganisms in the physiology and fitness of the host, an aspect of the subject that had been neglected for a long time, has now become an important goal of symbiotic studies. Among the interesting philosophical questions are the following: how should we study the impact of symbiosis on the fitness of symbiotic microorganisms? What framework should scientists use, and on what philosophical assumptions should such research be based? In other words, when does comparing fitness make sense? In this paper, I develop such a framework, and argue that these requirements comprise: (i) phenotypically similar individuals put in the same (ii) sub-environment and contrast it with another popular approach. Finally, I apply this to the symbiosis between the Euprymna scolopes squid and Vibrio fischeri bacteria to show how scientists should evaluate the fitness of symbiotic microorganisms.
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References
Abrams M. (2009), “What Determines Biological Fitness? The Problem of the Reference Environment,” Synthese 166 (1): 21–40.
Ariew A., Lewontin R.C. (2004), “The Confusions of Fitness,” The British Journal for the Philosophy of Science 55 (2): 347–363.
Bouchard F., Rosenberg A. (2004), “Fitness, Probability and the Principles of Natural Selection,” The British Journal for the Philosophy of Science 55: 693–712.
Bouchard F. (2011), “Darwinism without Populations: A More Inclusive Understanding of the ‘Survival of the Fittest’,” Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 42 (1): 106–114.
Bourrat P. (2015a), “Levels of Selection Are Artefacts of Different Fitness Temporal Measures,” Ratio 28 (1): 40–50.
Bourrat P. (2015b), “Distinguishing Natural Selection from Other Evolutionary Processes in the Evolution of Altruism,” Biological Theory 10 (4): 311–321.
Bourrat P. (2017), “Explaining Drift from a Deterministic Setting,” Biological Theory 12 (1): 27–38.
Bourrat P. (2022), “Unifying Heritability in Evolutionary Theory,” Studies in History and Philosophy of Science 91: 201–210.
Bourrat P., Guilhem D., Rose C. et al. (2022), “Tradeoff Breaking as a Model of Evolutionary Transitions in Individuality and Limits of the Fitness-Decoupling Metaphor,” eLife 11: e7371.
Brandon R. (1990), Adaptation and Environment, Princeton University Press, Princeton.
Brucker R.M., Bordenstein S.R. (2013), “The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia,” Science 341: 667–669.
Cabello-Yeves P.J., Zemskaya T.I., Zakharenko A.S. et al. (2020), “Microbiome of the Deep Lake Baikal, A Unique Oxic Bathypelagic Habitat,” Limnology and Oceanography 65: 1471–1488.
Chaney L., Baucom R.S. (2020), “The Soil Microbial Community Alters Patterns of Selection on Flowering Time And Fitness-Related Traits in Ipomoea Purpurea,” American Journal of Botany 107 (2): 186–194.
Combes C. (2001), The Ecology and Evolution of Intimate Interactions, Chicago University Press, Chicago.
Doolittle W.F., Booth A. (2017), “It’s the Song, Not the Singer: An Exploration of Holobiosis and Evolutionary Theory,” Biology & Philosophy 32 (1): 5–24.
Fierer N. (2017), “Embracing the Unknown: Disentangling The Complexities of the Soil Microbiome,” Nature Reviews Microbiology 15 (10): 579–590.
Futuyma D.J., Kirkpatrick M. (2017), Evolution (4th ed.), Sinauer Associates, Sinauer, Sunderland (MA).
Garcia J., Gerardo N. (2014), “The Symbiont Side of Symbiosis: Do Microbes Really Benefit?,” Frontiers in Microbiology 5: 1–6.
Godfrey-Smith P. (2009), Darwinian Populations and Natural Selection, Oxford University Press, Oxford.
Gould A.L., Zhang V., Lamberti L. et al. (2018), “Microbiome Interactions Shape Host Fitness,” Proceedings of the National Academy of Sciences of the United States of America 115 (51): E11951–E11960.
Kawecki T.J, Lenski R.E., Ebert D. et al. (2012), “Experimental Evolution,” Trends in Ecology and Evolution 27 (10): 547–560.
Keeling P., McCutcheon J. (2017), “Endosymbiosis: The Feeling is Not Mutual,” Journal of Theoretical Biology 434: 75–79.
Kristjansson J.K., Stetter K.O. (1998), “Thermophilic Bacteria,” [in:] Thermophilic Bacteria, J.K. Kristjansson (ed.), CRC Press, Boca Raton: 1-18.
Laplane L., Mantovani P., Adolphs R. et al. (2019), “Opinion: Why Science Needs Philosophy,” Proceedings of the National Academy of Sciences of the United States of America 116 (10): 3948–3952.
Lloyd E.A., Wade M.J. (2019), “Criteria for Holobionts from Community Genetics,” Biological Theory 14: 151–170.
Marshall D., Weatherson B. (2018), “Intrinsic vs. Extrinsic Properties,” The Stanford Encyclopedia of Philosophy, (Spring 2018 Edition) Edward N. Zalta (ed.), URL = https://plato.stanford.edu/archives/spr2018/entries/intrinsic-extrinsic [Accessed 13.05.2023].
Matthen M., Ariew A. (2002), “Two Ways of Thinking About Fitness and Natural Selection,” Journal of Philosophy 99 (2): 55–83.
McFall-Ngai M. (2014), “The Importance of Microbes in Animal Development: Lessons from the Squid-Vibrio Symbiosis,” The Annual Review of Microbiology 68: 177–194.
Millstein R. (2014), “How the Concept of Population Resolves Concepts of Environment,” Philosophy of Science 81 (5): 741–755.
Nowak P.G., Stencel A. (2022), “How Many Ways Can You Die? Multiple Biological Deaths as a Consequence of the Multiple Concepts of an Organism,” Theoretical Medicine and Bioethics 43 (2): 127–154.
Okasha S. (2018), Agents and Goals in Evolution, Oxford University Press, Oxford, New York.
Plech M., de Visser J.A., Korona R. (2014), “Heterosis is Prevalent Among Domesticated but not Wild Strains Of Saccharomyces Cerevisiae. G3: Genes| Genomes|,” Genetics 4 (2): 315–323.
Pradeu T. (2016), “The Many Faces of Biological Individuality,” Biology & Philosophy 31 (6): 761–773.
Ramsey G. (2006), “Block Fitness,” Studies in History and Philosophy of Biological and Biomedical Sciences 37 (3), part C: 484–498.
Rosshart S., Vassallo B., Angeletti D. et al. (2017), “Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance,” Cell 171 (5): 1015–1028.
Shreiner A.B., Kao J.Y., Young V.B. (2015), “The Gut Microbiome in Health and in Disease,” Current Opinion Gastroenterology 31 (1): 69–75.
Stencel A. (2016), “The Relativity of Darwinian Populations and the Ecology of Endosymbiosis,” Biology and Philosophy 31 (5): 619–637.
Stencel A. (2022) “Why the Evolution of Heritable Symbiosis Neither Enhances Nor Diminishes the Fitness of a Symbiont,” Philosophy, Theory, and Practice in Biology 14: 4.
Stewart E. (2012), “Growing Unculturable Bacteria,” Journal of Bacteriology 194: 4151–4160.
Suárez J. (2018), “The Importance of Symbiosis in Philosophy of Biology: An Analysis of the Current Debate on Biological Individuality and its Historical Roots,” Symbiosis 76: 77–96.
Suárez J. (2020), “The Stability of Traits Conception of the Hologenome: An Evolutionary Account of Holobiont Individuality,” History and Philosophy of the Life Sciences 42 (1): 1–27.
Suzuki A.T. (2017), “Links Between Natural Variation in the Microbiome and Host Fitness in Wild Mammals,” Integrative and Comparative Biology 57 (4): 756–769.
Veigl S.J., Juárez J., Stencel A. (2022), “Rethinking Hereditary Relations: The Reconstitutor as the Evolutionary Unit of Heredity,” Synthese 200 (5): 367.
Veigl S.J. (2017), “Use/Disuse Paradigms Are Ubiquitous Concepts in Characterizing the Process of Inheritance,” RNA Biology 14 (12): 1700–1704.
Veltsos P., Rodrigues N., Studer T. et al. (2020), “No Evidence that Y-Chromosome Differentiation Affects Male Fitness in a Swiss Population of Common Frogs,” Journal of Evolutionary Biology 33 (4): 401–409.
Wollenberg M., Ruby E. (2009), “Population Structure of Vibrio Fischeri Within the Light Organs of Euprymna Scolopes Squid From Two Oahu (Hawaii) Populations,” Applied and Environmental Microbiology 75 (1): 193–202.
Wollenberg M.S., Ruby E.G. (2012), “Phylogeny and Fitness of Vibrio Fischeri from the Light Organs of Euprymna Scolopes in Two Oahu, Hawaii Populations,” The ISME Journal 6 (2): 352–362.
Wooldridge S.A. (2010), “Is the Coral-Algae Symbiosis Really ‘Mutually Beneficial’ for the Partners?,” Bioessays 32: 615–625.